PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family YABBY
Protein Properties Length: 186aa    MW: 21062.1 Da    PI: 8.4131
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0144genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY204.25.2e-6361594170
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                  + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q ++ ++              +  +++++ + +ke+ +s++ +++ +
  Gh_D05G0144   6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSVSWQD-------------IQAPNHAMQDYRMKESGSSSKCNKFPM 90 
                  5689****************************************99988877666555.............455666777777777777777777788 PP

        YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      ++ v++   v+rPP krqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Gh_D05G0144  91 RPPANDVVTEERVVNRPPGKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 159
                  77778888888889*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-708159IPR006780YABBY protein
SuperFamilySSF470953.4E-8104152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-4107153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSNCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSVS  60
WQDIQAPNHA MQDYRMKESG SSSKCNKFPM RPPANDVVTE ERVVNRPPGK RQRVPSAYNQ  120
FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEANNQTKLH DASEKHIMSR  180
TALFNK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902163e-63BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447992.11e-138PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW463e-87YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A0B0NJJ91e-138A0A0B0NJJ9_G
STRINGVIT_11s0016g05590.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-88YABBY family protein